publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2021

  1. Revealing cell-fate bifurcations from transcriptomic trajectories of hematopoiesis
    Freedman, Simon L., Xu, Bingxian, Goyal, Sidhartha, and Mani, Madhav
    bioRxiv 2021
  2. Quantitative Analysis of Transcriptome Dynamics During Developmental State Transitions
    Johnson, K, Freedman, SL, Mani, M, and C, LaBonne
    in preparation 2021

2019

  1. Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles
    Freedman, Simon L, Suarez, Cristian, Winkelman, Jonathan D, Kovar, David R, Voth, Gregory A, Dinner, Aaron R, and Hocky, Glen M
    Proceedings of the National Academy of Sciences 2019

2018

  1. Nonequilibrium phase diagrams for actomyosin networks
    Freedman, Simon L, Hocky, Glen M, Banerjee, Shiladitya, and Dinner, Aaron R
    Soft matter 2018
  2. Simulating Physical Processes in the Actin Cytoskeleton
    Freedman, Simon
    2018

2017

  1. A versatile framework for simulating the dynamic mechanical structure of cytoskeletal networks
    Freedman, Simon L, Banerjee, Shiladitya, Hocky, Glen M, and Dinner, Aaron R
    Biophysical journal 2017
  2. Filament rigidity and connectivity tune the deformation modes of active biopolymer networks
    Stam, Samantha, Freedman, Simon L, Banerjee, Shiladitya, Weirich, Kimberly L, Dinner, Aaron R, and Gardel, Margaret L
    Proceedings of the National Academy of Sciences 2017

2014

  1. Systems and methods for providing business ratings
    Kim, Phillip, Hasha, Alex, Shergill, Jaidev, Homin, LEE, and Freedman, Simon
    2014